References
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Freier, S.M., Alkema, D., Sinclair, A., Neilson, T., & Turner, D.H. 1985a.
Contributions of dangling end stacking and terminal base-pair
formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes.
Biochemistry, 24, 4533-4539.
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-
Hickey, D.R., & Turner, D.H. 1985.
Effects of terminal mismatches on RNA stability: thermodynamics of
duplex formation for ACCGGGp, ACCGGAp, and ACCGGCp.
Biochemistry, 24, 3987-3991.
- Freier et al., 1985b
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Freier, S.M., Sinclair, A., Neilson, T., & Turner, D.H. 1985b.
Improved free energies for G.C base-pairs.
J. Mol. Biol., 185, 645-647.
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Freier, S.M., Kierzek, R., Jaeger, J.A., Sugimoto, N., Caruthers, M.H.,
Neilson, T., & Turner, D.H. 1986b.
Improved free-energy parameters for predictions of RNA duplex
stability.
Proc. Natl. Acad. Sci. USA, 83, 9373-9377.
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Freier, S.M., Kierzek, R., Caruthers, M.H., Neilson, T., & Turner, D.H. 1986a.
Free energy contributions of G.U and other terminal mismatches to
helix stability.
Biochemistry, 25, 3209-3213.
- Sugimoto et al., 1986
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Sugimoto, N., Kierzek, R., Freier, S.M., & Turner, D.H. 1986.
Energetics of internal GU mismatches in ribooligonucleotide helixes.
Biochemistry, 25, 5755-5759.
- Sugimoto et al., 1987a
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Sugimoto, N., Kierzek, R., & Turner, D.H. 1987a.
Sequence dependence for the energetics of dangling ends and terminal
mismatches in ribonucleic acid.
Biochemistry, 26, 4554-4558.
- Sugimoto et al., 1987b
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Sugimoto, N., Kierzek, R., & Turner, D.H. 1987b.
Sequence dependence for the energetics of terminal mismatches in
ribooligonucleotides.
Biochemistry, 26, 4559-4562.
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Turner, D.H., Sugimoto, N., Jaeger, J.A., Longfellow, C.E., Freier, S.M., &
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Improved parameters for prediction of RNA structure.
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Turner, D.H., & Sugimoto, N. 1988.
RNA structure prediction.
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Jaeger, J.A., Turner, D.H., & Zuker, M. 1989.
Improved predictions of secondary structures for RNA.
Proc. Natl. Acad. Sci. USA., 86, 7706-7710.
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Jaeger, J.A., Zuker, M., & Turner, D.H. 1990a.
Melting and chemical modification of a cyclized self-splicing group I
intron: similarity of structures in 1 M Na
, in 10 mM Mg
, and in
the presence of substrate.
Biochemistry, 29, 10147-58.
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Jaeger, J.A., Turner, D.H., & Zuker, M. 1990b.
Predicting optimal and suboptimal secondary structure for RNA.
Meth. Enzymol., 183, 281-306.
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Longfellow, C.E., Kierzek, R., & Turner, D.H. 1990.
Thermodynamic and spectroscopic study of bulge loops in
oligoribonucleotides.
Biochemistry, 29, 278-285.
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Peritz, A.E., Kierzek, R., Sugimoto, N., & Turner, D.H. 1991.
Thermodynamic study of internal loops in oligoribonucleotides:
symmetric loops are more stable than asymmetric loops.
Biochemistry, 30, 6428-6436.
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SantaLucia, J.Jr., Kierzek, R., & Turner, D.H. 1990.
Effects of GA mismatches on the structure and thermodynamics of RNA
internal loops.
Biochemistry, 29, 8813-8819.
- Zuker et al., 1991
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Zuker, M., Jaeger, J.A., & Turner, D.H. 1991.
A comparison of optimal and suboptimal RNA secondary structures
predicted by free energy minimization with structures determined by
phylogenetic comparison.
Nucleic Acids Res., 19, 2707-2714.
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SantaLucia, J.Jr., Kierzek, R., & Turner, D.H. 1991.
Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in
RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs.
Biochemistry, 30, 8242-8251.
- SantaLucia et al., 1992
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SantaLucia, J.Jr., Kierzek, R., & Turner, D.H. 1992.
Context dependence of hydrogen bond free energy revealed by
substitutions in an RNA hairpin.
Science, 256, 217-219.
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Banerjee, A.R., Jaeger, J.A., & Turner, D.H. 1993.
Thermal unfolding of a group I ribozyme: the low-temperature
transition is primarily disruption of tertiary structure.
Biochemistry, 32, 153-163.
- Serra et al., 1993
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Serra, M.J., Lyttle, M.H., Axenson, T.J., Schadt, C.A., & Turner., D.H. 1993.
RNA hairpin loop stability depends on closing base pair.
Nucleic Acids Res., 21, 3845-3849.
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Serra, M.J., Axenson, T.J., & Turner, D.H. 1994.
A model for the stabilities of RNA hairpins based on a study of the
sequence dependence of stability for hairpins of six nucleotides.
Biochemistry, 33, 14289-14296.
- Walter & Turner, 1994
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Walter, A.E., & Turner, D.H. 1994.
Sequence dependence of stability for coaxial stacking of RNA helixes
with Watson-Crick base paired interfaces.
Biochemistry, 33, 12715-12719.
- Walter et al., 1994
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Walter, A.E., Turner, D.H., Kim, J., Lyttle, M.H., Muller, P., Mathews, D.H.,
& Zuker, M. 1994.
Coaxial stacking of helixes enhances binding of oligoribonucleotides
and improves predictions of RNA folding.
Proc Natl Acad Sci USA, 91, 9218-9222.
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Wu, M., McDowell, J.A., & Turner, D.H. 1995.
A periodic table of symmetric tandem mismatches in RNA.
Biochemistry, 34, 3204-3211.
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Serra, M.J., Turner, D.H., & Freier, S.M. 1995.
Predicting thermodynamic properties of RNA.
Meth. Enzymol., 259, 243-261.