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Prediction of Melting Profiles for Nucleic Acids

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Table of Contents

Name

plot2ann.pl - create probability annotations from a .plot file

Synopsis

plot2ann.pl FILE.plot FILE.ct

Description

plot2ann.pl writes probability annotations for the structure in FILE.ct using the probabilities in FILE.plot. Both bases of each base pair are annotated with the probability of that pair; each single-stranded base is annotated with the probability that it is single-stranded.

When stored in FILE.ann, the output can be used for structure annotation in sir_graph.

See Also

hybrid-ss-min(1), hybrid-min(1)

Table of Contents

• Name
• Synopsis
• Description
• See Also

	Nicholas R. Markham Department of Computer Science	Michael Zuker Department of Mathematical Sciences
	Rensselaer Polytechnic Institute 2005-01-18